Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs34062664 chr2:24356168 CT/C 0.00011 178 25.28 26.92 17.43 KM Plot
PCPG rs34076068 chr14:74516497 G/A 0.000221 175 25.4 27.43 10.43 KM Plot
PCPG rs34078951 chr14:74553372 GA/G 2.24E-5 176 25.4 27.43 10.3 KM Plot
PCPG rs34088324 chr14:74339338 C/T 9.6E-6 178 25.47 28.3 10.3 KM Plot
PCPG rs34088942 chr17:50299568 C/CT 6.23E-5 177 25.53 28.38 14.47 KM Plot
PCPG rs34093108 chr12:26881788 C/T 8.77E-5 178 24.3 28.47 5.97 KM Plot
PCPG rs34099549 chr12:124085062 G/A 4.04E-5 177 25.87 19.87 20.13 KM Plot
PCPG rs34101533 chr2:107228445 AC/A 0.000239 176 26.57 23.53 25.87 KM Plot
PCPG rs34111839 chr12:56676817 CT/C 9.63E-8 178 25.35 27.33 0.8 KM Plot
PCPG rs34121364 chr14:74402006 A/G 1.03E-5 177 25.4 28.38 10.43 KM Plot
PCPG rs34127605 chr17:50293499 T/C 3.32E-5 178 27.27 25.97 14.43 KM Plot
PCPG rs34127884 chr14:74386824 T/G 1.16E-5 176 25.4 27.2 10.43 KM Plot
PCPG rs34133467 chr10:29853582 CCA/C 5.6E-11 176 25.67 17.52 10.3 KM Plot
PCPG rs34137148 chr2:24334731 C/CA 0.000129 175 25.4 26.92 17.43 KM Plot
PCPG rs34137719 chr16:89587118 GT/G 0.000342 171 25.92 25.53 19.3 KM Plot